DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in upper lobe of left lung (DETRF718WGE / ENCSR718WGE)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • macrophage
  • pulmonary alveolar type 2 cell
  • endothelial cell
  • T cell
snATAC-seq in upper lobe of left lung (DETRF824OCY / ENCSR824OCY)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • T cell
  • epithelial cell of lung
  • alveolar capillary type 1 endothelial cell
  • lung ciliated cell
  • alveolar adventitial fibroblast
  • pulmonary alveolar type 2 cell
  • neutrophil
  • natural killer cell
  • pulmonary alveolar type 1 cell
  • macrophage
  • alveolar fibroblast
  • vascular associated smooth muscle cell
  • mast cell
  • vein endothelial cell
  • plasma cell
  • alveolar capillary type 2 endothelial cell
  • endothelial cell of lymphatic vessel
  • respiratory basal cell
  • endothelial cell of artery
  • tracheobronchial smooth muscle cell
  • B cell
snATAC-seq in upper lobe of left lung (DETRF952HMV / ENCSR952HMV)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • pulmonary alveolar type 2 cell
  • fibroblast
  • macrophage
  • T cell
snATAC-seq in upper lobe of right lung (DETRF086LCZ / ENCSR086LCZ)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • pulmonary alveolar type 1 cell
  • pulmonary alveolar type 2 cell
  • alveolar adventitial fibroblast
  • macrophage
  • alveolar fibroblast
  • alveolar capillary type 1 endothelial cell
  • vein endothelial cell
  • lung ciliated cell
  • epithelial cell of lung
  • respiratory basal cell
  • neutrophil
  • T cell
  • vascular associated smooth muscle cell
  • endothelial cell of artery
  • tracheobronchial smooth muscle cell
snATAC-seq in ureter (DETRF465CKP / ENCSR465CKP)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • basal cell of urothelium
  • ureter urothelial cell
  • ureter urothelial cell
  • lymphocyte
  • fibroblast
  • endothelial cell
  • macrophage
snATAC-seq in uterus (DETRF028RFK / ENCSR028RFK)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • endothelial cell
snATAC-seq in uterus (DETRF455CVZ / ENCSR455CVZ)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • endothelial cell
snATAC-seq in uterus (DETRF828HVB / ENCSR828HVB)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • uterine smooth muscle cell
  • stromal cell
  • endothelial cell
  • fibroblast
  • lymphocyte
  • endothelial cell of lymphatic vessel
  • pericyte
  • macrophage
  • mast cell
  • neutrophil
snATAC-seq in vagina (DETRF441ZWO / ENCSR441ZWO)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • endothelial cell
  • vascular associated smooth muscle cell
  • smooth muscle cell
  • macrophage