DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in adrenal gland (DETRF028JGT / ENCSR028JGT)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • cortical cell of adrenal gland
  • mesenchymal cell
  • endothelial cell
  • leukocyte
  • neuroblast (sensu Vertebrata)
snATAC-seq in adrenal gland (DETRF194KHA / ENCSR194KHA)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • type I cell of adrenal cortex
  • type II cell of adrenal cortex
  • type III cell of adrenal cortex
  • adrenal medulla chromaffin cell
  • endothelial cell
  • endothelial cell of lymphatic vessel
  • vascular associated smooth muscle cell
  • Schwann cell
  • macrophage
  • T cell
snATAC-seq in adrenal gland (DETRF205VFW / ENCSR205VFW)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • cortical cell of adrenal gland
  • endothelial cell
  • mesenchymal cell
  • neuroblast (sensu Vertebrata)
  • leukocyte
snATAC-seq in adrenal gland (DETRF302LEY / ENCSR302LEY)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • cortical cell of adrenal gland
  • smooth muscle cell
  • endothelial cell
  • macrophage
  • vascular associated smooth muscle cell
snATAC-seq in adrenal gland (DETRF420EWQ / ENCSR420EWQ)

Male adult (26 years) - DETDR221IPH / ENCDO221IPH

Annotated reference cell types:

  • type I cell of adrenal cortex
  • type II cell of adrenal cortex
  • type III cell of adrenal cortex
  • adrenal medulla chromaffin cell
  • endothelial cell
  • endothelial cell of lymphatic vessel
  • vascular associated smooth muscle cell
  • Schwann cell
  • macrophage
  • T cell
snATAC-seq in adrenal gland (DETRF693GAD / ENCSR693GAD)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • type I cell of adrenal cortex
  • type II cell of adrenal cortex
  • type III cell of adrenal cortex
  • adrenal medulla chromaffin cell
  • endothelial cell
  • endothelial cell of lymphatic vessel
  • vascular associated smooth muscle cell
  • Schwann cell
  • macrophage
  • T cell
snATAC-seq in adrenal gland (DETRF725OFZ / ENCSR725OFZ)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • cortical cell of adrenal gland
  • neuroblast (sensu Vertebrata)
  • mesenchymal cell
  • leukocyte
  • endothelial cell
snATAC-seq in ascending aorta (DETRF411MLR / ENCSR411MLR)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • cardiac endothelial cell
  • macrophage
  • T cell
snATAC-seq in ascending aorta (DETRF808WCV / ENCSR808WCV)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • cardiac endothelial cell
snATAC-seq in bile duct (DETRF833BMK / ENCSR833BMK)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • blood vessel endothelial cell
  • peripheral nervous system neuron
  • T cell
  • hepatic portal fibroblast
  • vascular associated smooth muscle cell
  • mast cell
  • cholangiocyte
  • monocyte
  • hepatocyte
  • macrophage
  • erythroblast
  • adipocyte
  • endothelial cell of lymphatic vessel
  • stromal cell
  • natural killer cell
snATAC-seq in body of pancreas (DETRF234CRD / ENCSR234CRD)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • acinar cell
  • fibroblast
  • pancreatic ductal cell
  • enteroendocrine cell
  • macrophage
  • endothelial cell
  • T cell
snATAC-seq in body of pancreas (DETRF261TQO / ENCSR261TQO)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • acinar cell
  • macrophage
  • pancreatic ductal cell
  • enteroendocrine cell
  • endothelial cell
  • T cell
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