DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in body of pancreas (DETRF893WOE / ENCSR893WOE)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • T cell
  • acinar cell
  • pancreatic ductal cell
  • fibroblast
  • enteroendocrine cell
  • macrophage
snATAC-seq in body of pancreas (DETRF979ZOG / ENCSR979ZOG)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • acinar cell
  • pancreatic ductal cell
  • enteroendocrine cell
  • macrophage
  • smooth muscle cell
  • T cell
snATAC-seq in breast epithelium (DETRF438ETW / ENCSR438ETW)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • epithelial cell
  • epithelial cell
  • vascular associated smooth muscle cell
  • endothelial cell
snATAC-seq in breast epithelium (DETRF845QFX / ENCSR845QFX)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • epithelial cell
  • vascular associated smooth muscle cell
  • fibroblast
  • endothelial cell
snATAC-seq in colonic mucosa (DETRF375XCZ / ENCSR375XCZ)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • transit amplifying cell of colon
  • intestinal crypt stem cell of colon
  • enterocyte
  • enteroendocrine cell
  • tuft cell of colon
  • BEST4+ enteroycte
  • colon goblet cell
  • goblet cell
  • endothelial cell
  • fibroblast
  • myofibroblast cell
  • endothelial cell of lymphatic vessel
  • fibroblast
  • macrophage
  • mast cell
  • T cell
  • B cell
snATAC-seq in colonic mucosa (DETRF593FCC / ENCSR593FCC)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • goblet cell
  • transit amplifying cell of colon
  • enterocyte
  • BEST4+ enteroycte
  • colon goblet cell
  • enterocyte
  • tuft cell of colon
  • intestinal crypt stem cell of colon
  • enteroendocrine cell
  • endothelial cell
  • fibroblast
  • myofibroblast cell
  • fibroblast
  • endothelial cell of lymphatic vessel
  • macrophage
  • B cell
  • T cell
  • mast cell
snATAC-seq in esophagus mucosa (DETRF639HAJ / ENCSR639HAJ)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • smooth muscle cell
  • basal cell
snATAC-seq in esophagus muscularis mucosa (DETRF168TFI / ENCSR168TFI)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • epithelial cell of esophagus
  • vascular associated smooth muscle cell
  • macrophage
  • endothelial cell
  • T cell
snATAC-seq in esophagus muscularis mucosa (DETRF577BWJ / ENCSR577BWJ)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • smooth muscle cell
  • fibroblast
  • vascular associated smooth muscle cell
  • macrophage
  • Schwann cell
  • mast cell
  • endothelial cell
  • T cell
  • myofibroblast cell
snATAC-seq in esophagus muscularis mucosa (DETRF660NEE / ENCSR660NEE)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • fibroblast
  • Schwann cell
  • mast cell
  • macrophage
  • vascular associated smooth muscle cell
  • smooth muscle cell
  • endothelial cell
  • T cell
snATAC-seq in esophagus muscularis mucosa (DETRF871CTA / ENCSR871CTA)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • macrophage
  • fibroblast
  • smooth muscle cell
  • Schwann cell
  • endothelial cell
  • myofibroblast cell
  • T cell
  • mast cell
snATAC-seq in esophagus squamous epithelium (DETRF164GSH / ENCSR164GSH)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • epithelial cell
  • fibroblast
  • epithelial cell
  • macrophage
  • goblet cell
  • T cell
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