DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.


snATAC-seq in heart right ventricle (DETRF604PDO / ENCSR604PDO)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • cardiac muscle cell
  • fibroblast of cardiac tissue
  • macrophage
  • adipocyte
  • pericyte
  • endocardial cell
  • cardiac endothelial cell
  • smooth muscle cell
  • lymphocyte
  • cardiac neuron
  • mast cell
snATAC-seq in heart right ventricle (DETRF615TSN / ENCSR615TSN)

Female adult (56 years) - DETDR907YUG / ENCDO907YUG

Annotated reference cell types:

  • macrophage
  • fibroblast of cardiac tissue
  • cardiac endothelial cell
  • cardiac muscle cell
  • pericyte
  • cardiac neuron
  • lymphocyte
  • endocardial cell
  • smooth muscle cell
  • mesothelial cell of epicardium
snATAC-seq in heart right ventricle (DETRF681OLJ / ENCSR681OLJ)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • cardiac ventricle fibroblast
  • cardiac endothelial cell
  • pericyte
  • cardiac muscle cell
  • macrophage
  • cardiac neuron
  • smooth muscle cell
  • endocardial cell
  • mast cell
  • lymphocyte
  • adipocyte
snATAC-seq in heart right ventricle (DETRF690TAY / ENCSR690TAY)

Male adult (55 years) - DETDR439CAZ / ENCDO439CAZ

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac endothelial cell
  • adipocyte
  • fibroblast of cardiac tissue
  • pericyte
  • lymphocyte
  • endocardial cell
  • mesothelial cell of epicardium
  • smooth muscle cell
  • macrophage
  • cardiac neuron
snATAC-seq in heart right ventricle (DETRF772BEX / ENCSR772BEX)

Male adult (69 years) - DETDR477WED / ENCDO477WED

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac endothelial cell
  • fibroblast of cardiac tissue
  • pericyte
  • endocardial cell
  • smooth muscle cell
  • macrophage
  • adipocyte
  • cardiac neuron
  • lymphocyte
  • mesothelial cell of epicardium
snATAC-seq in heart right ventricle (DETRF814OLA / ENCSR814OLA)

Male adult (43 years) - DETDR967KID / ENCDO967KID

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac endothelial cell
  • fibroblast of cardiac tissue
  • lymphocyte
  • endocardial cell
  • smooth muscle cell
  • macrophage
  • pericyte
  • adipocyte
  • mesothelial cell of epicardium
  • cardiac neuron
  • mast cell
snATAC-seq in left cardiac atrium (DETRF299NEP / ENCSR299NEP)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac endothelial cell
  • cardiac atrium fibroblast
  • endocardial cell
  • macrophage
  • smooth muscle cell
  • pericyte
  • cardiac neuron
  • lymphocyte
  • adipocyte
  • mesothelial cell of epicardium
  • mast cell
snATAC-seq in left cardiac atrium (DETRF491LSZ / ENCSR491LSZ)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac atrium fibroblast
  • pericyte
  • cardiac endothelial cell
  • macrophage
  • cardiac neuron
  • endocardial cell
  • adipocyte
  • smooth muscle cell
  • lymphocyte
  • mast cell
  • mesothelial cell of epicardium
snATAC-seq in left cardiac atrium (DETRF777GVP / ENCSR777GVP)

Male adult (40 years) - DETDR392CRK / ENCDO392CRK

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac endothelial cell
  • macrophage
  • lymphocyte
  • mesothelial cell of epicardium
  • smooth muscle cell
  • cardiac atrium fibroblast
  • cardiac neuron
  • pericyte
  • endocardial cell
  • adipocyte
  • mast cell
snATAC-seq in left colon (DETRF830FPR / ENCSR830FPR)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • transit amplifying cell of colon
  • enterocyte
  • goblet cell
  • colon goblet cell
  • enteroendocrine cell
  • enterocyte
  • intestinal crypt stem cell of colon
  • BEST4+ enteroycte
  • tuft cell of colon
  • T cell
  • macrophage
  • B cell
  • plasma cell
  • natural killer cell
  • mast cell
  • innate lymphoid cell
  • fibroblast
  • myofibroblast cell
  • pericyte
  • endothelial cell
  • neural cell
  • fibroblast
  • endothelial cell of lymphatic vessel
  • interstitial cell of Cajal
snATAC-seq in left colon (DETRF904WIW / ENCSR904WIW)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • transit amplifying cell of colon
  • tuft cell of colon
  • enterocyte
  • intestinal crypt stem cell of colon
  • BEST4+ enteroycte
  • goblet cell
  • colon goblet cell
  • enterocyte
  • enteroendocrine cell
  • endothelial cell
  • fibroblast
  • fibroblast
  • myofibroblast cell
  • endothelial cell of lymphatic vessel
  • B cell
  • myeloid cell
  • T cell
  • mast cell
snATAC-seq in left colon (DETRF916RYB / ENCSR916RYB)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • transit amplifying cell of colon
  • enterocyte
  • enteroendocrine cell
  • colon goblet cell
  • intestinal crypt stem cell of colon
  • enterocyte
  • tuft cell of colon
  • goblet cell
  • BEST4+ enteroycte
  • fibroblast
  • myofibroblast cell
  • endothelial cell
  • endothelial cell of lymphatic vessel
  • macrophage
  • B cell
  • T cell