DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in left lobe of liver (DETRF139ATR / ENCSR139ATR)

Male adult (45 years) - DETDR757VPQ / ENCDO757VPQ

Annotated reference cell types:

  • hepatocyte
  • cholangiocyte
  • hepatic stellate cell
  • macrophage
  • endothelial cell
snATAC-seq in left lung (DETRF606VJQ / ENCSR606VJQ)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • alveolar fibroblast
  • pulmonary alveolar type 2 cell
  • macrophage
  • pulmonary alveolar type 1 cell
  • alveolar adventitial fibroblast
  • alveolar capillary type 1 endothelial cell
  • epithelial cell of lung
  • vein endothelial cell
  • T cell
  • vascular associated smooth muscle cell
  • tracheobronchial smooth muscle cell
  • neutrophil
snATAC-seq in left lung (DETRF816NWE / ENCSR816NWE)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • T cell
  • pulmonary alveolar type 1 cell
  • alveolar capillary type 1 endothelial cell
  • pulmonary alveolar type 2 cell
  • alveolar fibroblast
  • macrophage
  • endothelial cell of lymphatic vessel
  • respiratory basal cell
  • plasma cell
  • alveolar adventitial fibroblast
  • vascular associated smooth muscle cell
  • endothelial cell of artery
  • lung ciliated cell
  • mast cell
  • vein endothelial cell
  • B cell
  • neutrophil
  • alveolar capillary type 2 endothelial cell
  • epithelial cell of lung
  • tracheobronchial smooth muscle cell
  • natural killer cell
  • mesothelial cell
snATAC-seq in left ventricle myocardium inferior (DETRF541CKC / ENCSR541CKC)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • cardiac muscle cell
  • pericyte
  • fibroblast of cardiac tissue
  • macrophage
  • endocardial cell
  • cardiac neuron
  • cardiac endothelial cell
  • smooth muscle cell
  • lymphocyte
  • mast cell
snATAC-seq in left ventricle myocardium superior (DETRF425CZQ / ENCSR425CZQ)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • fibroblast
  • cardiac muscle cell
  • macrophage
  • cardiac neuron
  • cardiac endothelial cell
  • pericyte
  • mast cell
  • smooth muscle cell
  • lymphocyte
  • endocardial cell
snATAC-seq in lower leg skin (DETRF397ODX / ENCSR397ODX)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • epithelial cell
  • epithelial cell
  • endothelial cell
  • fibroblast
  • macrophage
  • Schwann cell
snATAC-seq in lower leg skin (DETRF474TGL / ENCSR474TGL)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • fibroblast
  • epithelial cell
  • macrophage
  • endothelial cell
snATAC-seq in lower leg skin (DETRF513HZN / ENCSR513HZN)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • fibroblast
  • endothelial cell
  • epithelial cell
  • macrophage
  • Schwann cell
  • epithelial cell
snATAC-seq in lower leg skin (DETRF733SZL / ENCSR733SZL)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • epithelial cell
  • epithelial cell
  • endothelial cell
  • fibroblast
  • vascular associated smooth muscle cell
  • smooth muscle cell
  • Schwann cell
snATAC-seq in lower lobe of left lung (DETRF391BWM / ENCSR391BWM)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • alveolar fibroblast
  • pulmonary alveolar type 1 cell
  • T cell
  • pulmonary alveolar type 2 cell
  • epithelial cell of lung
  • alveolar adventitial fibroblast
  • macrophage
  • vein endothelial cell
  • respiratory basal cell
  • alveolar capillary type 2 endothelial cell
  • neutrophil
  • alveolar capillary type 1 endothelial cell
  • natural killer cell
  • lung ciliated cell
  • endothelial cell of lymphatic vessel
  • mast cell
  • plasma cell
  • endothelial cell of artery
  • vascular associated smooth muscle cell
  • B cell
  • tracheobronchial smooth muscle cell
  • mesothelial cell
snATAC-seq in lower lobe of left lung (DETRF592WYM / ENCSR592WYM)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • pulmonary alveolar type 1 cell
  • pulmonary alveolar type 2 cell
  • macrophage
  • alveolar adventitial fibroblast
  • alveolar fibroblast
  • vein endothelial cell
  • alveolar capillary type 1 endothelial cell
  • tracheobronchial smooth muscle cell
  • vascular associated smooth muscle cell
  • respiratory basal cell
  • natural killer cell
  • endothelial cell of artery
  • epithelial cell of lung
  • T cell
  • neutrophil
  • lung ciliated cell
snATAC-seq in lower lobe of left lung (DETRF799NRE / ENCSR799NRE)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • pulmonary alveolar type 2 cell
  • alveolar adventitial fibroblast
  • pulmonary alveolar type 1 cell
  • macrophage
  • alveolar fibroblast
  • epithelial cell of lung
  • respiratory basal cell
  • alveolar capillary type 1 endothelial cell
  • T cell
  • neutrophil
  • vein endothelial cell
  • tracheobronchial smooth muscle cell
  • natural killer cell
  • vascular associated smooth muscle cell
  • lung ciliated cell
  • endothelial cell of artery
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