DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in lower lobe of right lung (DETRF548BXU / ENCSR548BXU)

Female adult (65 years) - DETDR719GRD / ENCDO719GRD

Annotated reference cell types:

  • pulmonary alveolar type 1 cell
  • pulmonary alveolar type 2 cell
  • alveolar fibroblast
  • macrophage
  • alveolar adventitial fibroblast
  • alveolar capillary type 1 endothelial cell
  • vein endothelial cell
  • T cell
  • neutrophil
  • lung ciliated cell
  • epithelial cell of lung
  • respiratory basal cell
  • tracheobronchial smooth muscle cell
  • vascular associated smooth muscle cell
snATAC-seq in lower lobe of right lung (DETRF830CXR / ENCSR830CXR)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • pulmonary alveolar type 2 cell
  • alveolar fibroblast
  • macrophage
  • pulmonary alveolar type 1 cell
  • alveolar adventitial fibroblast
  • alveolar capillary type 1 endothelial cell
  • epithelial cell of lung
  • respiratory basal cell
  • T cell
  • neutrophil
  • vein endothelial cell
  • vascular associated smooth muscle cell
  • lung ciliated cell
  • tracheobronchial smooth muscle cell
snATAC-seq in lung (DETRF083HFN / ENCSR083HFN)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • vein endothelial cell
  • vascular associated smooth muscle cell
  • pulmonary alveolar type 2 cell
  • alveolar capillary type 1 endothelial cell
  • pulmonary alveolar type 1 cell
  • macrophage
  • alveolar fibroblast
  • endothelial cell of artery
  • alveolar capillary type 2 endothelial cell
  • alveolar adventitial fibroblast
  • lung ciliated cell
  • respiratory basal cell
  • endothelial cell of lymphatic vessel
  • T cell
  • neutrophil
  • plasma cell
  • mesothelial cell
  • mast cell
  • B cell
  • epithelial cell of lung
  • natural killer cell
  • tracheobronchial smooth muscle cell
snATAC-seq in mucosa of descending colon (DETRF181TLD / ENCSR181TLD)

Male adult (40 years) - DETDR392CRK / ENCDO392CRK

Annotated reference cell types:

  • transit amplifying cell of colon
  • enterocyte
  • intestinal crypt stem cell of colon
  • enterocyte
  • tuft cell of colon
  • goblet cell
  • BEST4+ enteroycte
  • colon goblet cell
  • enteroendocrine cell
  • fibroblast
  • endothelial cell of lymphatic vessel
  • myofibroblast cell
  • endothelial cell
  • fibroblast
  • mast cell
  • macrophage
  • T cell
  • B cell
snATAC-seq in mucosa of descending colon (DETRF384AYS / ENCSR384AYS)

Male adult (26 years) - DETDR221IPH / ENCDO221IPH

Annotated reference cell types:

  • transit amplifying cell of colon
  • intestinal crypt stem cell of colon
  • enterocyte
  • BEST4+ enteroycte
  • enterocyte
  • tuft cell of colon
  • goblet cell
  • colon goblet cell
  • enteroendocrine cell
  • fibroblast
  • fibroblast
  • endothelial cell of lymphatic vessel
  • myofibroblast cell
  • endothelial cell
  • macrophage
  • T cell
  • B cell
  • mast cell
snATAC-seq in mucosa of descending colon (DETRF605FGF / ENCSR605FGF)

Female adult (61 years) - DETDR186XRB / ENCDO186XRB

Annotated reference cell types:

  • transit amplifying cell of colon
  • enterocyte
  • colon goblet cell
  • tuft cell of colon
  • enterocyte
  • intestinal crypt stem cell of colon
  • goblet cell
  • BEST4+ enteroycte
  • enteroendocrine cell
  • fibroblast
  • myofibroblast cell
  • fibroblast
  • endothelial cell
  • T cell
  • myeloid cell
  • mast cell
  • B cell
snATAC-seq in mucosa of descending colon (DETRF922FEK / ENCSR922FEK)

Female adult (61 years) - DETDR186XRB / ENCDO186XRB

Annotated reference cell types:

  • goblet cell
  • enterocyte
  • transit amplifying cell of colon
  • intestinal crypt stem cell of colon
  • enterocyte
  • tuft cell of colon
  • colon goblet cell
  • BEST4+ enteroycte
  • enteroendocrine cell
  • T cell
  • B cell
  • plasma cell
  • macrophage
  • myofibroblast cell
  • fibroblast
  • fibroblast
  • endothelial cell
  • neural cell
  • endothelial cell of lymphatic vessel
  • pericyte
snATAC-seq in omental fat pad (DETRF181XXQ / ENCSR181XXQ)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • mesothelial cell
  • adipocyte
  • vascular associated smooth muscle cell
  • endothelial cell
snATAC-seq in omental fat pad (DETRF274HQD / ENCSR274HQD)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • mesothelial cell
  • fibroblast
  • adipocyte
  • macrophage
  • endothelial cell
  • T cell
snATAC-seq in omental fat pad (DETRF492GGN / ENCSR492GGN)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • adipocyte
  • fibroblast
  • endothelial cell
snATAC-seq in omental fat pad (DETRF644SCP / ENCSR644SCP)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • adipocyte
  • mesothelial cell
  • fibroblast
  • T cell
  • endothelial cell
  • macrophage
snATAC-seq in ovary (DETRF075FKI / ENCSR075FKI)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • stromal cell of ovary
  • endothelial cell
  • vascular associated smooth muscle cell
  • macrophage
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