DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in ovary (DETRF105VKN / ENCSR105VKN)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • endothelial cell
  • stromal cell of ovary
  • vascular associated smooth muscle cell
  • macrophage
  • endothelial cell of lymphatic vessel
  • lymphocyte
snATAC-seq in ovary (DETRF180GUX / ENCSR180GUX)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • stromal cell of ovary
  • endothelial cell
  • macrophage
  • vascular associated smooth muscle cell
snATAC-seq in ovary (DETRF197GLE / ENCSR197GLE)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • stromal cell of ovary
  • endothelial cell
  • vascular associated smooth muscle cell
  • macrophage
  • endothelial cell of lymphatic vessel
  • lymphocyte
snATAC-seq in ovary (DETRF305VES / ENCSR305VES)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • stromal cell of ovary
  • macrophage
  • vascular associated smooth muscle cell
  • endothelial cell of lymphatic vessel
  • lymphocyte
  • endothelial cell
snATAC-seq in ovary (DETRF322LEY / ENCSR322LEY)

Female adult (61 years) - DETDR186XRB / ENCDO186XRB

Annotated reference cell types:

  • stromal cell of ovary
  • endothelial cell
  • vascular associated smooth muscle cell
  • macrophage
  • endothelial cell of lymphatic vessel
  • lymphocyte
snATAC-seq in ovary (DETRF533CSY / ENCSR533CSY)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • stromal cell of ovary
  • endothelial cell
  • vascular associated smooth muscle cell
  • macrophage
  • lymphocyte
  • endothelial cell of lymphatic vessel
snATAC-seq in ovary (DETRF582VOF / ENCSR582VOF)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • mesothelial cell
snATAC-seq in pancreas (DETRF229VVY / ENCSR229VVY)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • pancreatic ductal cell
  • acinar cell
  • pancreatic stellate cell
  • alpha cell, gamma cell, epsilon cell
  • T cell
  • myeloid cell
  • endothelial cell
  • type B pancreatic cell
  • leukocyte
  • pancreatic PP cell
  • Schwann cell
snATAC-seq in pancreas (DETRF496XXB / ENCSR496XXB)

Male adult (26 years) - DETDR221IPH / ENCDO221IPH

Annotated reference cell types:

  • pancreatic ductal cell
  • acinar cell
  • pancreatic stellate cell
  • alpha cell, gamma cell, epsilon cell
  • endothelial cell
  • type B pancreatic cell
  • Schwann cell
  • myeloid cell
  • leukocyte
  • T cell
  • pancreatic PP cell
snATAC-seq in pancreas (DETRF690NZI / ENCSR690NZI)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • acinar cell
  • pancreatic ductal cell
  • alpha cell, gamma cell, epsilon cell
  • pancreatic stellate cell
  • T cell
  • type B pancreatic cell
  • myeloid cell
  • leukocyte
  • endothelial cell
  • pancreatic PP cell
  • Schwann cell
snATAC-seq in pancreas (DETRF868CRK / ENCSR868CRK)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • pancreatic ductal cell
  • acinar cell
  • myeloid cell
  • pancreatic stellate cell
  • T cell
  • endothelial cell
  • alpha cell, gamma cell, epsilon cell
  • type B pancreatic cell
  • leukocyte
  • Schwann cell
snATAC-seq in Peyer patch (DETRF052DKH / ENCSR052DKH)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • macrophage
  • T cell
  • tuft cell of colon
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