DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in Peyer patch (DETRF101JHK / ENCSR101JHK)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • epithelial cell
  • tuft cell of colon
  • endothelial cell
  • smooth muscle cell
  • macrophage
  • T cell
snATAC-seq in Peyer patch (DETRF652WJE / ENCSR652WJE)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • epithelial cell
  • endothelial cell
  • macrophage
snATAC-seq in placenta (DETRF029KFQ / ENCSR029KFQ)

Male embryonic (unknown unknown) - DETDR023YQQ / ENCDO023YQQ

Annotated reference cell types:

  • syncytiotrophoblast cell
  • endothelial cell of placenta
  • placental villous trophoblast
  • Hofbauer cell
  • leukocyte
snATAC-seq in placenta (DETRF207ABL / ENCSR207ABL)

Male embryonic (unknown unknown) - DETDR384FEJ / ENCDO384FEJ

Annotated reference cell types:

  • syncytiotrophoblast cell
  • endothelial cell of placenta
  • placental villous trophoblast
  • Hofbauer cell
  • leukocyte
snATAC-seq in psoas muscle (DETRF000XQD / ENCSR000XQD)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • type I muscle cell
  • type II muscle cell
  • endothelial cell
  • fibro/adipogenic progenitor cell
  • lymphocyte
  • skeletal muscle satellite cell
  • macrophage
  • pericyte
  • muscle cell
  • adipocyte
snATAC-seq in psoas muscle (DETRF332XEW / ENCSR332XEW)

Female adult (47 years) - DETDR528BHB / ENCDO528BHB

Annotated reference cell types:

  • type I muscle cell
  • endothelial cell
  • fibro/adipogenic progenitor cell
  • muscle cell
  • type II muscle cell
  • macrophage
  • skeletal muscle satellite cell
snATAC-seq in psoas muscle (DETRF869LEV / ENCSR869LEV)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • type I muscle cell
  • type II muscle cell
  • macrophage
  • muscle cell
  • fibro/adipogenic progenitor cell
  • pericyte
  • endothelial cell
  • lymphocyte
  • skeletal muscle satellite cell
  • adipocyte
snATAC-seq in psoas muscle (DETRF916EDP / ENCSR916EDP)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • type I muscle cell
  • type II muscle cell
  • skeletal muscle satellite cell
  • lymphocyte
  • pericyte
  • endothelial cell
  • fibro/adipogenic progenitor cell
  • macrophage
  • muscle cell
  • adipocyte
snATAC-seq in psoas muscle (DETRF963HLE / ENCSR963HLE)

Female adult (61 years) - DETDR186XRB / ENCDO186XRB

Annotated reference cell types:

  • type II muscle cell
  • type I muscle cell
  • fibro/adipogenic progenitor cell
  • endothelial cell
  • pericyte
  • macrophage
  • skeletal muscle satellite cell
  • lymphocyte
snATAC-seq in right atrium auricular region (DETRF717FVA / ENCSR717FVA)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac atrium fibroblast
  • macrophage
  • cardiac endothelial cell
snATAC-seq in right atrium auricular region (DETRF776EOI / ENCSR776EOI)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • mesothelial cell of epicardium
  • cardiac atrium fibroblast
  • cardiac muscle cell
  • macrophage
snATAC-seq in right cardiac atrium (DETRF486KVX / ENCSR486KVX)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • endocardial cell
  • macrophage
  • cardiac endothelial cell
  • lymphocyte
  • cardiac muscle cell
  • cardiac atrium fibroblast
  • cardiac neuron
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