DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in sigmoid colon (DETRF388NCA / ENCSR388NCA)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • tuft cell of colon
  • vascular associated smooth muscle cell
  • smooth muscle cell
  • endothelial cell
  • myofibroblast cell
  • macrophage
  • Schwann cell
snATAC-seq in stomach (DETRF266ZPZ / ENCSR266ZPZ)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • smooth muscle cell
  • macrophage
  • peptic cell
  • T cell
  • gastric goblet cell
snATAC-seq in stomach (DETRF549JEQ / ENCSR549JEQ)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • peptic cell
  • endothelial cell
  • smooth muscle cell
  • epithelial cell
  • T cell
  • macrophage
snATAC-seq in stomach (DETRF848EID / ENCSR848EID)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • peptic cell
  • fibroblast
  • T cell
  • macrophage
  • epithelial cell
snATAC-seq in stomach (DETRF940QRM / ENCSR940QRM)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • parietal cell
  • epithelial cell
  • peptic cell
  • fibroblast
  • T cell
  • macrophage
snATAC-seq in suprapubic skin (DETRF364GEA / ENCSR364GEA)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • fibroblast
  • epithelial cell
  • endothelial cell
  • epithelial cell
  • macrophage
snATAC-seq in suprapubic skin (DETRF397LYX / ENCSR397LYX)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • epithelial cell
  • vascular associated smooth muscle cell
  • endothelial cell
snATAC-seq in thoracic aorta (DETRF402SNA / ENCSR402SNA)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • fibroblast
  • endothelial cell of artery
  • mast cell
  • macrophage
snATAC-seq in thoracic aorta (DETRF822GXQ / ENCSR822GXQ)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • fibroblast
  • T cell
  • endothelial cell of artery
  • macrophage
  • epithelial cell
snATAC-seq in thyroid gland (DETRF796RXX / ENCSR796RXX)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • thyroid follicular cell
  • fibroblast
  • endothelial cell
snATAC-seq in thyroid gland (DETRF817VFO / ENCSR817VFO)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • thyroid follicular cell
  • fibroblast
  • T cell
  • endothelial cell
snATAC-seq in thyroid gland (DETRF909OXO / ENCSR909OXO)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • thyroid follicular cell
  • vascular associated smooth muscle cell
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