DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in tibial artery (DETRF058XJK / ENCSR058XJK)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • smooth muscle cell
  • macrophage
snATAC-seq in tibial artery (DETRF302CMX / ENCSR302CMX)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • fibroblast
  • vascular associated smooth muscle cell
  • endothelial cell of artery
  • smooth muscle cell
snATAC-seq in tibial nerve (DETRF205TUH / ENCSR205TUH)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • Schwann cell
snATAC-seq in tibial nerve (DETRF453BVR / ENCSR453BVR)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • fibroblast
  • smooth muscle cell
  • endothelial cell
  • macrophage
snATAC-seq in tibial nerve (DETRF726QTF / ENCSR726QTF)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • fibroblast
  • smooth muscle cell
  • Schwann cell
  • epithelial cell
  • endothelial cell
  • macrophage
snATAC-seq in transverse colon (DETRF007QIO / ENCSR007QIO)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • type I muscle cell
  • type II muscle cell
  • fibroblast
  • endothelial cell
snATAC-seq in transverse colon (DETRF349XKD / ENCSR349XKD)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • colon goblet cell
  • enterocyte
  • vascular associated smooth muscle cell
  • T cell
  • tuft cell of colon
  • macrophage
snATAC-seq in transverse colon (DETRF434SXE / ENCSR434SXE)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • smooth muscle cell
  • enterocyte
  • tuft cell of colon
  • colon goblet cell
snATAC-seq in transverse colon (DETRF506YMX / ENCSR506YMX)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • epithelial cell
  • vascular associated smooth muscle cell
  • T cell
  • tuft cell of colon
  • colon goblet cell
snATAC-seq in transverse colon (DETRF997YNO / ENCSR997YNO)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • enterocyte
  • colon epithelial cell
  • endothelial cell
  • vascular associated smooth muscle cell
  • macrophage
  • T cell
snATAC-seq in upper lobe of left lung (DETRF089CGX / ENCSR089CGX)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • pulmonary alveolar type 2 cell
  • T cell
  • macrophage
snATAC-seq in upper lobe of left lung (DETRF182PJN / ENCSR182PJN)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • smooth muscle cell
  • endothelial cell
  • macrophage
  • T cell
  • pulmonary alveolar type 2 cell
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