DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in esophagus squamous epithelium (DETRF453TVZ / ENCSR453TVZ)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • epithelial cell
  • T cell
snATAC-seq in esophagus squamous epithelium (DETRF757EGB / ENCSR757EGB)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • epithelial cell
  • macrophage
  • T cell
  • fibroblast
  • endothelial cell
snATAC-seq in fallopian tube (DETRF690KGJ / ENCSR690KGJ)

Female adult (46 years) - DETDR411EVD / ENCDO411EVD

Annotated reference cell types:

  • myofibroblast cell
  • fibroblast
  • pericyte
  • fallopian tube secretory epithelial cell
  • fallopian tube ciliated cell
  • macrophage
  • lymphocyte
  • endothelial cell
  • smooth muscle cell
  • adipocyte
  • endothelial cell of lymphatic vessel
snATAC-seq in fallopian tube (DETRF815FGT / ENCSR815FGT)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • fallopian tube secretory epithelial cell
  • fallopian tube ciliated cell
  • macrophage
  • endothelial cell
  • fibroblast
  • smooth muscle cell
  • lymphocyte
  • pericyte
  • myofibroblast cell
  • endothelial cell of lymphatic vessel
  • adipocyte
snATAC-seq in gastrocnemius medialis (DETRF023FME / ENCSR023FME)

Female adult (51 years) - DETDR271OUW / ENCDO271OUW

Annotated reference cell types:

  • type I muscle cell
  • epithelial cell
  • endothelial cell
  • fibroblast
snATAC-seq in gastrocnemius medialis (DETRF139TIQ / ENCSR139TIQ)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • type I muscle cell
  • skeletal muscle satellite cell
  • endothelial cell
  • fibroblast
snATAC-seq in gastrocnemius medialis (DETRF244GZL / ENCSR244GZL)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • epithelial cell
  • type I muscle cell
  • macrophage
  • T cell
snATAC-seq in gastrocnemius medialis (DETRF696YOC / ENCSR696YOC)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • type I muscle cell
  • type II muscle cell
  • endothelial cell
  • fibroblast
  • vascular associated smooth muscle cell
  • skeletal muscle satellite cell
snATAC-seq in gastrocnemius medialis (DETRF819EGE / ENCSR819EGE)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • type II muscle cell
  • type I muscle cell
  • macrophage
snATAC-seq in gastroesophageal sphincter (DETRF215BTH / ENCSR215BTH)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • fibroblast
  • epithelial cell
  • endothelial cell
  • smooth muscle cell
  • myofibroblast cell
  • T cell
  • macrophage
snATAC-seq in gastroesophageal sphincter (DETRF868ZEI / ENCSR868ZEI)

Male adult (54 years) - DETDR451RUA / ENCDO451RUA

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • fibroblast
  • macrophage
  • smooth muscle cell
  • Schwann cell
  • endothelial cell
  • T cell
  • myofibroblast cell
  • mast cell
snATAC-seq in heart left ventricle (DETRF003DSI / ENCSR003DSI)

Male adult (50 years) - DETDR602PYC / ENCDO602PYC

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac ventricle fibroblast
  • cardiac endothelial cell
  • pericyte
  • cardiac neuron
  • smooth muscle cell
  • macrophage
  • lymphocyte
  • endocardial cell
  • mesothelial cell of epicardium
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