DeepDETAILS Reference Samples

Reference samples provide the annotated single-cell and single-nucleus ATAC-seq profiles used to assign bulk regulatory signals to specific cell types.

snATAC-seq in right cardiac atrium (DETRF499VTJ / ENCSR499VTJ)

Female adult (59 years) - DETDR856ZOJ / ENCDO856ZOJ

Annotated reference cell types:

  • cardiac muscle cell
  • cardiac atrium fibroblast
  • cardiac endothelial cell
  • cardiac neuron
  • endocardial cell
  • macrophage
snATAC-seq in right cardiac atrium (DETRF607OJR / ENCSR607OJR)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • cardiac endothelial cell
  • endocardial cell
  • cardiac atrium fibroblast
snATAC-seq in right lobe of liver (DETRF112UBQ / ENCSR112UBQ)

Male adult (40 years) - DETDR392CRK / ENCDO392CRK

Annotated reference cell types:

  • hepatocyte
  • hepatic stellate cell
  • cholangiocyte
  • macrophage
  • endothelial cell
snATAC-seq in right lobe of liver (DETRF114OKU / ENCSR114OKU)

Female adult (47 years) - DETDR912EIY / ENCDO912EIY

Annotated reference cell types:

  • hepatocyte
  • macrophage
  • hepatic stellate cell
  • endothelial cell
  • cholangiocyte
snATAC-seq in right lobe of liver (DETRF364FHN / ENCSR364FHN)

Female adult (41 years) - DETDR575WHY / ENCDO575WHY

Annotated reference cell types:

  • hepatocyte
  • cholangiocyte
  • hepatic stellate cell
  • endothelial cell
  • macrophage
snATAC-seq in right lobe of liver (DETRF402PKA / ENCSR402PKA)

Female child (16 years) - DETDR575EGL / ENCDO575EGL

Annotated reference cell types:

  • hepatocyte
  • macrophage
  • hepatic stellate cell
  • cholangiocyte
  • endothelial cell
snATAC-seq in right lobe of liver (DETRF559MJT / ENCSR559MJT)

Female adult (53 years) - DETDR793LXB / ENCDO793LXB

Annotated reference cell types:

  • hepatocyte
  • hepatic stellate cell
  • endothelial cell
snATAC-seq in right lobe of liver (DETRF568XID / ENCSR568XID)

Male adult (45 years) - DETDR757VPQ / ENCDO757VPQ

Annotated reference cell types:

  • hepatocyte
  • cholangiocyte
  • macrophage
  • hepatic stellate cell
  • endothelial cell
snATAC-seq in right lobe of liver (DETRF630YEA / ENCSR630YEA)

Female adult (47 years) - DETDR912EIY / ENCDO912EIY

Annotated reference cell types:

  • hepatocyte
  • hepatic stellate cell
  • macrophage
  • cholangiocyte
  • endothelial cell
snATAC-seq in Right ventricle myocardium inferior (DETRF628POB / ENCSR628POB)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • smooth muscle cell
  • cardiac ventricle fibroblast
  • cardiac endothelial cell
  • cardiac muscle cell
  • lymphocyte
  • macrophage
  • pericyte
  • endocardial cell
  • cardiac neuron
  • mast cell
  • adipocyte
snATAC-seq in Right ventricle myocardium superior (DETRF548IRG / ENCSR548IRG)

Male adult (60 years) - DETDR520EJG / ENCDO520EJG

Annotated reference cell types:

  • cardiac muscle cell
  • macrophage
  • cardiac endothelial cell
  • cardiac ventricle fibroblast
  • lymphocyte
  • cardiac neuron
  • adipocyte
  • smooth muscle cell
  • pericyte
  • mast cell
  • endocardial cell
snATAC-seq in sigmoid colon (DETRF367GKP / ENCSR367GKP)

Male adult (37 years) - DETDR845WKR / ENCDO845WKR

Annotated reference cell types:

  • vascular associated smooth muscle cell
  • fibroblast
  • smooth muscle cell
  • Schwann cell
  • macrophage
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